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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000655330 | ||||||||
Common Name | MYB121 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MYB | ||||||||
Protein Properties | Length: 366aa MW: 39328.9 Da PI: 8.3556 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.2 | 4e-18 | 50 | 97 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdell++++k+ G g+W+t +++ g+ R++k+c++rw +yl MDP0000655330 50 RGPWTPEEDELLANYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 97 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 46.7 | 7.2e-15 | 108 | 148 | 6 | 48 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l MDP0000655330 108 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 148 89***************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-21 | 41 | 99 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.818 | 45 | 97 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.11E-28 | 47 | 144 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.8E-13 | 49 | 99 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-16 | 50 | 97 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.01E-11 | 52 | 97 | No hit | No description |
PROSITE profile | PS51294 | 23.246 | 98 | 152 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-23 | 100 | 153 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-13 | 102 | 150 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-13 | 108 | 148 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.46E-11 | 108 | 148 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MRNPSSSSKA AAAASAKMQT TITASSSSSK AAGVAGGTKT PCCAKVGLKR GPWTPEEDEL 60 LANYIKKEGE GRWRTLPKRA GLLRCGKSCR LRWMNYLRXS VKRGQIAPDE EDLILRLHRL 120 LGNRWSLIAG RIPGRTDNEI KNYWNTHLSK KLISQGIDPR THKPLNXDHH SAADDXDVDN 180 TNKSTAVASS SKANDRFSNP NPSPPSDRLV HKEGDPNNSR NDGNIAIADH DLGTIVXGFA 240 NMITSINNPD ASSSAAATGT LSLRSNNSHG GVLLXGGGNE EDDVFSSFLN SLINEDPFPG 300 QHQLQQVLQN GNVSAHAAAA RSENLPLIXM TSATTAPSTF GWESAVLMSS AFIQNDHQXV 360 NDQTE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-24 | 48 | 152 | 5 | 108 | B-MYB |
1mse_C | 2e-24 | 48 | 152 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-24 | 48 | 152 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.16909 | 0.0 | fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ020112 | 0.0 | KJ020112.1 Malus hybrid cultivar MYB12a protein (MYB12a) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008366136.1 | 0.0 | PREDICTED: transcription repressor MYB5-like | ||||
Swissprot | Q38850 | 4e-83 | MYB5_ARATH; Transcription repressor MYB5 | ||||
TrEMBL | S5FZE3 | 0.0 | S5FZE3_MALDO; MYB transcription factor | ||||
STRING | VIT_06s0004g00570.t01 | 1e-101 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3894 | 30 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 1e-81 | myb domain protein 5 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000655330 |